PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g13260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 312aa    MW: 33467.7 Da    PI: 6.2309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g13260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09160204554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Vradi08g13260.1 160 HSIAERLRRERIAERMKALQELVPSiN------KTDRAVMLDEIVDYVKFL 204
                      99***********************77......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.51E-11153209No hitNo description
SuperFamilySSF474593.93E-15153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.05155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-11161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGNSSSEGL GDDFFEQILA VPEAPVGYGR TVATDVGMLQ LGSTTPTAAA LRGGGMMPLG  60
LNLEQSAFLS HHDSRNLVDD VVNVDPTVHN NHHHHHQHLT LHNNNSSPSS TPPITVMISY  120
KLQAFQGQGG GGPASMSGTQ QAPGIRPRVR ARRGQATDPH SIAERLRRER IAERMKALQE  180
LVPSINKTDR AVMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAQLVADVP LSAVEQGEDI  240
EGGANEQAWD KWSNDGTEQQ VAKLMEEDVG AAMQFLQSKA LCIMPISLAS AIFRMPQSES  300
STVIKPESNS H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514572.10.0PREDICTED: transcription factor UNE12-like isoform X1
SwissprotO227681e-81UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0L9VJK90.0A0A0L9VJK9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQ900.0A0A0S3SQ90_PHAAN; Uncharacterized protein
STRINGGLYMA20G36770.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-67bHLH family protein